Installation

Prerequisites

To be able to use this package, you need to install Cytoscape and have it running in the background.

You will also need to install CyTargetLinker, a Cytoscape extension. CyTargetLinker can be installed using Cytoscape GUI by selecting Apps|App Manager from the menu bar, or from here.

Package

The most recent code can be installed from the source on GitHub with:

$ python3 -m pip install git+https://github.com/AldisiRana/VarGenPath.git

For developers, the repository can be cloned from GitHub and installed in editable mode with:

$ git clone https://github.com/AldisiRana/VarGenPath.git
$ cd VarGenPath
$ python3 -m pip install -e .