Index

Symbols

--extend-network vargenpath command line option --image-path <image_path> vargenpath command line option --image-type <image_type> vargenpath command line option --linkset-path <linkset_path> vargenpath command line option --network-file-type <network_file_type> vargenpath command line option

--network-name <network_name> vargenpath command line option --network-path <network_path> vargenpath command line option --session-path <session_path> vargenpath command line option --variants-file <variants_file> vargenpath command line option

E

extend_vargen_network() (in module vargenpath.utils)

F

file_reader() (in module vargenpath.utils)

G

get_associated_genes() (in module vargenpath.utils)

get_cytoscape_connection() (in module vargenpath.utils) get_vargenpath_network() (in module vargenpath.pipeline)

S

save_image() (in module vargenpath.utils)

save_network() (in module vargenpath.utils) save_session() (in module vargenpath.utils)

V

var_genes_network() (in module vargenpath.utils) vargenpath command line option --extend-network --image-path <image_path> --image-type <image_type> --linkset-path <linkset_path> --network-file-type <network_file_type> --network-name <network_name> --network-path <network_path> --session-path <session_path> --variants-file <variants_file>

vargenpath.pipeline (module) vargenpath.utils (module)